Craving a dessert that’s tangy, sweet, and perfectly portioned? These Mini Lemon Cheesecakes are a delightful twist on the classic—featuring a buttery graham cracker crust, velvety lemon-kissed filling, and a light, zesty finish. Baked in muffin tins, these single-serve cheesecakes are ideal for parties, holidays, or an anytime treat that’s just the right size.
Why You’ll Love These Mini Lemon Cheesecakes
Mini cheesecakes are the perfect make-ahead dessert—easy to serve, no slicing required, and endlessly versatile. With a burst of lemon flavor and a silky texture, these minis bring a sunny upgrade to traditional cheesecake, minus the fuss of a water bath or springform pan.
They’re:
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Fresh and tangy, thanks to real lemon juice and zest
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Creamy and rich, without being overly heavy
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Perfectly portioned for parties, picnics, or lunchbox treats
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Freezer-friendly for grab-and-go indulgence anytime
Ingredient Overview: What You’ll Need
For the Crust:
Graham Cracker Crumbs
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Creates the base for that classic cheesecake bite.
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Use gluten-free graham crackers if needed.
Melted Butter
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Binds the crust and adds richness.
Sugar
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Lightly sweetens the base.
For the Lemon Cheesecake Filling:
Cream Cheese (Room Temperature)
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The star ingredient—use full-fat for the creamiest result.
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Let it soften fully for smooth blending.
Granulated Sugar
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Sweetens the filling without overpowering the lemon.
Eggs
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Bind the mixture and give structure as it bakes.
Lemon Juice + Zest
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Fresh is best for a vibrant, real citrus punch.
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Zest adds aroma and depth—don’t skip it.
Sour Cream or Greek Yogurt
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Balances the richness of the cream cheese and adds a tangy note.
Vanilla Extract
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Rounds out the flavors subtly.
Step-by-Step Instructions
Step 1: Preheat and Prepare
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Preheat oven to 325°F (165°C).
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Line a standard muffin tin with 12 paper liners.
Step 2: Make the Crust
In a bowl, combine:
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1 cup graham cracker crumbs
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3 tablespoons melted butter
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2 tablespoons sugar
Mix until it resembles wet sand. Spoon 1 tablespoon of crust mixture into each muffin liner and press down firmly using the bottom of a glass or spoon.
Bake for 5 minutes, then let cool slightly while you make the filling.
Step 3: Make the Cheesecake Filling
In a mixing bowl, beat:
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2 packages (16 oz total) cream cheese (room temp)
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½ cup sugar
Mix until smooth and fluffy.
Add in:
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2 large eggs, one at a time
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¼ cup sour cream or Greek yogurt
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2 tablespoons fresh lemon juice
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1 tablespoon lemon zest
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1 teaspoon vanilla extract
Beat until fully combined and creamy—don’t overmix.
Step 4: Fill and Bake
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Spoon the filling evenly into the liners (about ¾ full).
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Tap the pan gently on the counter to release any air bubbles.
Bake for 16–18 minutes, until the centers are just set and no longer jiggly.
Step 5: Chill
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Cool at room temperature for 20 minutes.
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Refrigerate for at least 2 hours (or overnight) before serving.
Tips, Variations & Substitutions

Expert Tips:
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Use room temperature ingredients for a smooth, lump-free filling.
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Don’t overbake—cheesecakes should be just set in the center.
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Cool gradually to prevent cracking.
Flavor Variations:
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Lemon-Blueberry: Add a teaspoon of blueberry jam on top before baking.
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Lemon-Coconut: Sprinkle sweetened coconut flakes on the crust before baking.
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Lavender Lemon: Add a small pinch of dried culinary lavender to the filling for a floral twist.
Substitutions:
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Graham Crackers → Crushed vanilla wafers, shortbread cookies, or gluten-free options.
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Sour Cream → Greek yogurt or crème fraîche.
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Sugar → Coconut sugar or monk fruit sweetener for refined sugar-free versions.
Serving Ideas & Occasions
When to Serve:
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Spring & summer gatherings: Light, refreshing, and citrusy
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Baby showers or bridal showers: Easy to serve on a dessert table
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Mother’s Day, Easter, or brunch
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Meal prep desserts: Keep in the fridge for a healthy portion-controlled treat
How to Garnish:
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A swirl of whipped cream
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Fresh berries (raspberries, blueberries, strawberries)
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Thin lemon slices or lemon zest curls
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A dusting of powdered sugar
Nutritional & Health Notes
These mini cheesecakes are naturally:
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Gluten-free adaptable (with GF graham crackers)
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Lower sugar than full-size versions
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High in protein from cream cheese, eggs, and yogurt
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Portion-controlled: Around 150–200 calories per cheesecake, depending on topping
You can also make them refined sugar-free with natural sweeteners, and they freeze beautifully for a treat anytime without overindulging.
FAQ: Mini Lemon Cheesecakes
1. Can I make these ahead of time?
Yes! These are perfect for prepping 1–2 days in advance. Store them covered in the fridge until ready to serve.
2. Can I freeze mini lemon cheesecakes?
Absolutely. Freeze them once chilled and set. Wrap individually and store in a freezer-safe container for up to 2 months. Thaw in the fridge overnight.
3. How do I prevent cracks in mini cheesecakes?
Avoid overmixing the batter and overbaking. Also, let them cool gradually to room temp before refrigerating.
4. Can I use bottled lemon juice?
Fresh lemon juice is highly recommended for flavor. Bottled juice tends to be bitter or flat, but if it’s all you have, reduce slightly and increase zest.
5. Can I make this recipe without eggs?
Yes! You can use egg replacer, or try a baked version with cornstarch or silken tofu to maintain structure, but texture will vary slightly.
6. Do I need a water bath?
No water bath is required for mini cheesecakes. The small size allows even baking without cracking.
7. How long do they last?
Stored in an airtight container, they last:
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Fridge: Up to 5 days
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Freezer: Up to 2 months